Advanced Materials
S. I. Cho, W. J. Kwon, S-J Choi, P. Kim, S-A Park, J. Kim, S. J. Son, R. Xiao, S-H Kim, and S. B. Lee, “Nanotube-Based Ultrafast Electrochromic Display,” Advanced Materials, 2005, 17, 171-175.
A. Prakash, A. McCormick, and M. R. Zachariah, "Synthesis and Reactivity of a Super-Reactive Metastable Intermolecular Composite (MIC) Formulation of Al/KMnO4," Advanced Materials, 2005, 17, 900.
Analytical Chemistry
Y. Wang, P. A. Rudnick, E. L. Evans, Z. Zhuang, J. Li, D. L. DeVoe, C. S. Lee, and B. M. Balgley, “Proteome Analysis of Microdissected Tumor Tissue Using a Capillary Isoelectric Focusing-Based Multidimensional Separation Platform Coupled with ESI-Tandem MS”, Anal. Chem., 2005, 77, 6549-6556.
P. Sivanesan, K. Okamoto, D. English, C. S. Lee, and D. L. DeVoe, “Polymer Nanochannels Fabricated by Thermomechanical Deformation for Single Molecule Analysis,” Anal. Chem., 2005, 77, 2252-2258.
M. B. Pomfret, C. Stoltz, B. Varughese and R. A. Walker, "Structural and Compositional Characterization of Yttria Stabilized Zirconia (YSZ): Evidence of Surface Stabilized, Low Valence Metal Species," Anal. Chem., 2005, 77, 1791-1795.
P. Pribil and C. Fenselau, “Characterization of Enterobacteria Using MALDI-TOF Mass Spectrometry,” Anal. Chem., 2005, 77: 6092-6095.
Angewandte Chemie International Edition
J. Lagona, P. Mukhopadhyay, S. Chakrabarti and L. Isaacs, “The Cucurbit[n]uril Family,” Angew. Chem. Int. Ed., 2005, 44, 4844-4870.
S. Zhou, B. Varughese, B. Eichhorn, G. Jackson and K. McIlwrath, “CuPt Core-Shell and Alloy Nanoparticles for Heterogeneous NOx Reduction: Anomalous Stability and Reactivity from a Core-Shell Nanostructure," Angew. Chem. Int. Ed., 2005, 44, 4539-454.
Journal of Molecular Biology
N. A. Becker, J. D. Kahn, and L. J. Maher, III., “Bacterial Repression Loops Require Enhanced DNA Flexibility,” J. Mol. Biol., 2005, 349, 716-730.
B. Tarus, J. E. Straub and D. Thirumalai, “Probing the Initial Stage of Aggregation of the A Beta(10-35)-Protein: Assessing the Propensity for Peptide Dimerization,” J. Mol. Biol., 2005, 345, 1141,1156.
R. I. Dima, C. Hyeon and D. Thirumalai, “Extracting Stacking Interaction Parameters for RNA from the Data Set of Native Structures,” J. Mol. Bio., 2005, 347, 53-69
G. Stan, B. R. Brooks and D. Thirumalai, “Probing the ‘Annealing’ Mechanism of GroEL Mini-Chaperone Using Molecular Dynamics Simulations,” J. Mol. Bio., 2005, 350, 817-829.
S. Chauhan, G. Caliskan, R. M. Briber, U. Perez-Salas, P. Rangan, D. Thirumalai and S. A. Woodson, “RNA Tertiary Interactions Mediate Native Collapse of a Bacterial Group I Ribozyme,” J. Mol. Bio., 2005, 353, 1199-1209
D. K. Klimov and D. Thirumalai, “Symmetric Connectivity of Secondary Structure Elements Enhances the Diversity of Folding Pathways”, J. Mol. Bio., 2005, 353, 1171-1186.
Journal of Proteome Research
Z. Fu, and C. Fenselau, “Proteomic Evidence for a Role for Nucleolin and PARP-1 in Drug Resistance,” J. Prot. Res., 2005, 4, 1583-1591.
Y. An, Z. Fu, P. Gutierrez, and C. Fenselau, “Solution Isoelectric Focusing for Peptide Analysis: Comparative Investigation of an Insoluble Nuclear Protein Fraction,” J. Prot. Res., 2005, 4, 2126-2132.
A. Rahbar and C. Fenselau, “Unbiased Examination of Changes in Plasma Membrane Proteins in Cells with Acquired Drug Resistance,” J. Prot. Res., 2005, 4, 2148-2153.
P. A. Rudnick, Y. Wang, E. L. Evans, C. S. Lee, and B. M. Balgley, “Large Scale Interpretation of MASCOT Results Using a Mass Accuracy Based Threshold Effectively Reduces False Negative Identifications,” J. Prot. Res., 2005, 4, 1353-1360.
Y. Wang, B. M. Balgley, P. A. Rudnick, E. L. Evans, D. L. DeVoe, and C. S. Lee, “Integrated Capillary Isoelectric Focusing/Nano-Reversed Phase Liquid Chromatography Coupled with ESI-MS for Characterization of Intact Yeast Proteins,” J. Prot. Res., 2005, 4, 36-42.
Journal of the American Chemical Society
S-M Liu, C. Ruspic, P. Mukhopadhyay, S. Chakrabarti, P. Y. Zavalij and L. Isaacs, “The CB[n] Family: Prime Components for Self-Sorting Systems,” J. Am. Chem. Soc., 2005, 127, 15959-15967.
S. Liu, P. Y. Zavalij and L. Isaacs, “Cucurbit[10]uril,” J. Am. Chem. Soc. 2005, 127, 16798-16799.
L. Isaacs, S.-K. Park, S. Liu, Y. H. Ko, N. Selvapalam, Y. Kim, H. Kim, P. Y. Zavalij, G.-H. Kim, H.-S. Lee and K. Kim, “The Inverted Cucurbit[n]uril Family,” J. Am. Chem. Soc., 2005, 127, 18000-18001.
C. Sundararajan and D. E. Falvey, “Photorelease of Carboxylic Acids, Amino Acids and Phosphates from N-Alkylpicolinium Esters Using Photosensitization by High Wavelength Laser Dyes,” J. Am. Chem. Soc., 2005, 127, 8000-8001.
K. Jayaraman, K. Okamoto, S. J. Son, C. Luckett, A. H. Gopalani, S. B. Lee and D. S. English, “Observing Capillarity in Hydrophobic Silica Nanotubes”, J. Am. Chem. Soc., 2005, 127, 17385.
S. J. Son, J. Reichel, B. He, M. Schuchman, and S. B. Lee, “Magnetic Nanotubes for Magnetic-Field-Assisted Bioseparation, Biointeraction, and Drug Delivery,” J. Am. Chem. Soc., 2005, 127, 7316-7317.(paper highlighted in Nature Methods, 2005, 2, p. 484 and highlighted in NanoBiotech News, 2005, 3, p. 8)
A.N. Naganathan and V. Munoz, “Scaling of folding times with protein size,” J. Am. Chem. Soc. 2005, 127, 480-481.
A. N. Naganathan, J. M. Sanchez-Ruiz and V. Munoz, “Direct measurement of barrier heights in protein folding,” J. Am. Chem. Soc., 2005, 127, 17970-17971.
L. Li, K. D. Karlin and S. E. Rokita, "Changing Selectivity of DNA Oxidation from Deoxyribose to Guanine by Ligand Design and a New Binuclear Copper Complex," J. Am. Chem. Soc., 2005, 127, 520-521.
F. Mohr, S. Binfield, J. C. Fettinger and A. N. Vedernikov, “A Practical, Fast and High-yielding Aziridination Procedure Using Simple Cu(II) Complexes Containing N-Donor Pyridine-based Ligands,” J. Org. Chem. 2005, 70, 4833-4839.
Molecular Cell
R. Varadan, M. Assfalg, S. Raasi, C. Pickart and D. Fushman, “Structural Determinants for Selective Recognition of a Lys48-Linked Polyubiquitin Chain by a UBA Domain,” Molecular Cell., 2005, 18, 687-698. (IF ~17-20)
Nano Letters
R. A. Farrer, F. L. Butterfield, V. W. Chen and J. T. Fourkas, “Highly Efficient Multiphoton-Absorption-Induced Luminescence from Gold Nanoparticles,” Nano Lett., 2005, 5, 1139-1142.
A. Prakash, A. McCormick, and M. R. Zachariah, "Tuning the Reactivity of Energetic Nanoparticles by creation of a Core-Shell Nanostructure," NanoLetters, 2005, 5(7), 1375
B. Xu, C. Tao, J. E. Reutt-Robey and E. D. Williams, “Chiral Symmetry Breaking in Two Dimensional ACA-C60 Intermixed Systems,” Nano Letters, 2005, 5, (11), 2207-2211.
Natural Structural and Molecular Biology
S. Raasi, R. Varadan, D. Fushman and C. M. Pickart, “Diverse polyubiquitin interaction properties of ubiquitin-associated domains,” Nat. Struct. Mol. Biol., 2005, 12, 708-714. (IF ~ 12
Physical Review Letters
P. T. Hosmer, H. Schatz, A. Aprahamian, O. Arndt, R. R. C. Clement, A. Estrade, K-L Kratz, S. N. Liddick, P. F. Mantica, W. F. Mueller, F. Montes, A. C. Morton, M. Ouellette, E. Pellegrini, B. Pfeiffer, P. Reeder, P. Santi, M. Steiner, A. Stolz, B. E. Tomlin, W. B. Walters, and A. Wöhr, "Half-Life of the doubly magic r-process nucleus Ni-78," Phys. Rev. Let., 2005, 94, 112501.
V. Barsegov and D. Thirumalai, “Probing Protein-Protein Interactions by Dynamic Force Correlation Spectroscopy,” Phys. Rev. Lett., 2005, 95, 168302.
G. Caliskan, C. Hyeon, U. Perez-Salas, R. M. Briber, S. A. Woodson and D. Thirumalai, “Persistence Length Changes Dramatically as RNA Folds,” Phys. Rev. Lett., 2005, 95, 268303.
M. Ranganathan, D. B. Dougherty, W. G. Cullen, T. Zhao, J. D. Weeks, and E. D. Williams, “Spiral Evolution in a Confined Geometry,” Phys. Rev. Lett., 2005, 95, 225505/1-4.
A. P. Robinson, P. J. Woods, D. Seweryniak, C. N. Davids, M. P. Carpenter, A. A. Hecht, R. V. F. Janssens, D. Peterson, J. Shergur, S. Sinha, W. B. Walters, and S. Zhu, "Ground state proton radioactivity from Pr-121: when was this exotic nuclear decay mode first discovered," Phys. Rev. Lett., 2005, 95, 032502/1-4.
Proceedings of the National Academy of Sciences
V. Barsegov and D. Thirumalai, “Dynamics of Unbinding of Cell Adhesion Molecules: Transition from Catch to Slip Bonds,” Proc. Nat’l Acad. Sci. (USA), 2005, 102, 1835-1839.
M. S. Cheung, D. Klimov and D. Thirumalai, “Molecular Crowding Enhances Native State Stability and Refolding Rates of Globular Proteins,” Proc. Nat’l Acad. Sci. (USA), 2005, 102, 4753-4758.
C. Hyeon and D. Thirumalai, “Mechanical Unfolding of RNA Hairpins”, Proc. Nat’l Acad. Sci. (USA), 2005, 102, 6789-6794.
G. Ziv, G. Haran and D. Thirumalai, “Ribosome Exit Tunnel Can Entropically Stabilize Alpha-Helices,” Proc. Nat’l Acad. Sci. (USA), 2005, 102, 18956-18961.
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