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Recent Representative Publications-2006


Analytical Chemistry

S. Swatkoski, S. Russell, N. Edwards and C. Fenselau, “Rapid Chemical Digestion of Small Acid- Soluble Spore Proteins for Rapid Analysis of Bacillus Spores,” Anal. Chem., 2006, 78: 181-188.

Q. Tu, T. Wang, C. J. Welch, P. Wang, X. Jia, C. Raab, X. Bu, D. Bykowski, B. Hohenstaufen, and M. P. Doyle, “Identification and Characterization of Isomeric Intermediates in a Catalyst Formation Reaction by Means of Speciation Analysis Using HPLC-ICPMS and HPLC-ESI-MS,” Anal. Chem., 2006, 78, 1282-1289

Journal Biological Chemistry

J. E. Friedman, J. A. Watson Jr., D. W.-H. Lam and S. E. Rokita, “Iodotyrosine deiodinase is the first mammalian member of the NADH oxidase/flavin reductase superfamily,” J. Biol. Chem., 2006, 281, 2812-2819.

Angewandte Chemie International Edition

J. L. Seganish., P. V. Santacroce, K. J. Salimian. J. C. Fettinger. P. Zavalij, and J. T. Davis, “Regulating supramolecular function in membranes: Calixarenes that enable or inhibit transmembrane Cl- transport,” Angew. Chem. Int. Ed. Engl., 2006, 128, 3334-3338.

M. B. Harney, Y. Zhang, and L. R. Sita, “Discrete, Multiblock Isotactic-Atactic Stereoblock Polypropene Microstructures of Differing Block Architectures through Programmable Stereomodulated Living Ziegler-Natta Polymerization,” Angew. Chem. Int. Ed., 2006, 45, 2400-2404 (VIP status).

M. B. Harney, Y. Zhang, and L. R. Sita, “Bimolecular Control over Polypropene Stereochemical Microstructure in a Well Defined Two-State System and a New Fundamental Form: Stereogradient Polypropene,” Angew. Chem. Int. Ed., 2006, 45, 6140-6144 (VIP status).

Journal of Molecular Biology

M. J. Eddins, R. Varadan, D. Fushman, C. M. Pickart, and C. Wolberger, “Crystal Structure and Solution NMR Studies of Lys48-linked Tetraubiquitin at Neutral pH,” J Mol Biol., published online Dec.29, 2006.

Z. A. Wood, L. H. Weaver, P. H. Brown, D. Beckett, and B. W. Matthews, “Co-repressor Induced Order and Biotin Repressor Dimerization: A Case for Divergent Followed by Convergent Evolution,” J. Mol. Biol., 2006, 357, 509-523.

A. Ghatak, and D. A. Julin, “Kinetics of ATP-stimulated nuclease activity of the Escherichia coli RecBCD enzyme,” J. Mol. Biol., 2006, 361, 954-968

Journal of Proteome Research

T. Guo, P. A. Rudnick, W. Wang, C. S. Lee, D. L. DeVoe, and B. M. Balgley, “Characterization of the Human Salivary Proteome by Capillary Isoelectric Focusing/Nano-Reversed Phase Liquid Chromatography Coupled with ESI-Tandem MS”, J. Prot. Res., 2006, 5, 1469-1478.

R. Strong, T. Nakanishi, D. Ross and C. Fenselau, “Alterations in the Mitochondrial Proteome of Adriamycin Resistant MCF-7 Breast Cancer Cells,” J.  Proteome Research, 2006, 5, 2389-2395.

Journal of the American Chemical Society

E. N. Esenturk, J. Fettinger and B. Eichhorn, “Synthesis, Structure and Dynamic Properties of [Ni2Sn17]4-,” J. Am. Chem. Soc., 2006, 128, 12-13.

G. Caliskan, R. M. Briber, D. Thirumalai, V. Garcia-Sakai, S. A. Woodson and A. P. Sokolov, “Dynamic Transition in tRNA is Solvent Induced,” J. Am. Chem. Soc., 2006,128, 32-33.

M. S. Kaucher, W.A. Harrell and J. T. Davis, “A unimolecular G-quadruplex that functions as a synthetic transmembrane Na+ transporter,” J. Am. Chem. Soc., 2006, 128, 38-39.

A. N. Vedernikov, S. A. Binfield, P. Y. Zavalij, and J. R. Khusnutdinova, “Stoichiometric Aerobic PtII-Me Bond Cleavage in Aqueous Solutions to Produce Methanol and a PtII(OH) Complex,” J. Am. Chem. Soc., 2006, 128, 82-83.

S. Zhou, K. McIlwrath, G. Jackson and B. Eichhorn, “Enhanced CO Tolerance for Hydrogen Activation in Au-Pt Dendritic Heteroaggregate Nanostructures,” J. Am. Chem. Soc., 2006, 128, 1780-1781.

R. A. Farrer, C. N. LaFratta, L. Li, J. Praino and M. J. Naughton, B. E. A. Saleh, M. C. Teich and J. T. Fourkas, “Selective Functionalization of 3-D Polymeric Microstructures,” J. Amer. Chem. Soc., 2006, 128, 1796-1797.

M. B. Harney, R. J. Keaton, J. C. Fettinger and L. R. Sita, “Living Ziegler-Natta Polymerization by Early Transition Metals: Synthesis and Evaluation of Cationic Zirconium Alkyl Complexes Bearing b-Hydrogens as Models for Propagating Centers,” J. Am. Chem. Soc., 2006, 128, 3420-3432.

A. J. Catino, J. M. Nichols, B. J. Nettles, and M. P. Doyle, “The Oxidative Mannich Reaction Catalyzed by Dirhodium Caprolactamate,” J. Am. Chem. Soc., 2006, 128, 5648-5649.

S. Thyagarajan, N. N. Murthy, A. Sargeant, K. D. Karlin and S. E. Rokita, “Selective DNA Strand Scission with Binuclear Copper Complexes:  Implications for the Involvement of a Cu2-O2 Active Species,” J. Am. Chem. Soc., 2006, 128, 7003-7008.

J. B. Hall and D. Fushman, “Variability of the 15N Chemical Shielding Tensors in the B3 Domain of Protein G from 15N Relaxation Measurements at Several Fields.  Implications for Backbone Order Parameters,” J.Am.Chem.Soc., 2006, 128, 7855-7870.

E. N. Esenturk, J. Fettinger and B. Eichhorn, “The Pb122- and Pb102- Zintl Ions and the M@Pb122- and M@Pb102- Cluster Series Where M = Ni, Pd, Pt” J. Am. Chem. Soc., 2006, 128, 9178-9186.

R. K. Boeckman, Jr., P. Shao, S. T. Wrobleski, D. J. Boehmler, G. R. Heintzelman, A. J. Barbosa, “Toward the Development of a General Chiral Auxiliary.  A Total Synthesis of (+)-Tetronolide via a Tandem-Ketene Trapping [4 + 2] Cycloaddition Strategy,” J. Am. Chem. Soc. 2006, 128, 10572-10588.

E. Weinert, R. Dondi, S. Colloredo-Melz, K. N. Frankenfield, C. H. Mitchell, M. Freccero and S. E. Rokita, “Substituents on Quinone Methides Strongly Modulate Formation and Stability of Their Nucleophlic Adducts,” J. Am. Chem. Soc. 2006, 128, 11940-11947.

E. Khaskin, P. Y. Zavalij and A. N.Vedernikov, “Facile Arene C-H Bond Activation and Alkane Dehydrogenation with Anionic LPtIIMe2‑ in Hydrocarbon – Water Systems (L = Dimethyldi(2-pyridyl)borate),” J. Am. Chem. Soc., 2006, 128, 13054-13055

P. Mukhopadhyay, P. Y. Zavalij and L. Isaacs, “High Fidelity Kinetic Self-Sorting in Multi-Component Systems Based on Guests with Multiple Binding Epitopes,” J. Am. Chem. Soc., 2006, 128, 14093-14102.

W. H. Huang, S. Liu, P. Y. Zavalij and L. Isaacs, “Nor-Seco-Cucurbit[10]uril Exhibits Homotropic Allosterism,” J. Am. Chem. Soc., 2006, 128, 14744-14745.

T. Pons, I. L. Medintz, X. Wang, D. S. English and H. Mattoussi, “Solution-Phase Single Quantum Dot Fluorescence Resonance Energy Transfer,” J. Am. Chem. Soc., 2006, 128, 15324-31.

L. Ma. M. Iezzi, M. S. Kaucher, Y.-F. Lam and J. T. Davis, “Cation exchange in lipophilic G-quadruplexes: Not all ion binding sites are equal,” J. Am. Chem. Soc., 2006, 128, 15269-15277.

Y. E. Ryabov, C. Geraghty, A. Varshney, and D. Fushman, “An efficient computational method for predicting rotational diffusion tensors of globular proteins using an ellipsoid representation.” J Am Chem Soc, 2006, 128, 15432-44.

S. J. Son, and S. B. Lee*, “Controlled Gold Nanoparticle Diffusion in Nanotubes:  Platfom of Partial Functionalization and Gold Capping,” J. Am. Chem. Soc. (Communication), 2006, 128, 15974-15975.

D. Bykowski, K.-H. Wu, and M. P. Doyle, “Vinyldiazolactone as a Vinylcarbene Precursor: Highly Selective C-H Insertion and Cyclopropanation Reactions,” J. Am. Chem. Soc., 2006, 128, 16038-16039.

A. Epshteyn, P. Y. Zavalij and L. R. Sita, “High Oxidation State Neutral and Cationic Tantalum(IV) Alkyl Complexes That Are Stable Towards b-Hydrogen and b-Methyl Eliminations,” J. Am. Chem. Soc., 2006, 128, 16052-16053.

Lab on a Chip

L. Zhu, C. S. Lee and D. L. DeVoe, “Integrated Microfluidic UV Absorbance Detector with Attomol-Level Sensitivity for BSA,” Lab. Chip, 2006, 6, 115-120.

Nature

M. Sadqi, D. Fushman, and V. Muñoz, “Atom-by-atom analysis of global downhill protein folding.” Nature, 2006, 442, 317-21.

Nucleic Acids Research

A. Amzallag, C. Vaillant, M. Jacob, M. Unser, J. Bednar, J. Kahn, A. Stasiak, J. Dubochet, and J. Maddocks, “3-D Reconstruction and Comparison of Shapes of DNA Minicircles Observed by Cryo-Electron Microscopy,” Nucleic Acids Res., 2006, 34, e125.

J.D. Levin, D. Fiala, M. F. Samala, J. D. Kahn, and R. J. Peterson, “Position-Dependent Effects of Locked Nucleic Acid (LNA) on DNA Sequencing and PCR Primers,” Nucleic Acids Res., 2006, 34 (20), e142.

R. J. McDonald, J. D. Kahn, and L. J. Maher, “DNA bending by bHLH charge variants,” Nucleic Acids Res., 2006, 34, 4846-4856.

Physical Review Letters

B. Alver, B. B. Back, M. D. Baker, M. Ballintijn, D. S. Barton, R. R. Betts, R. Bindel, W. Busza, Z. Chai, V. Chetluru, E. Garcia, T. Gburek, K. Gulbrandsen, J. Hamblen, I. Harnarine, C. Henderson, D. J. Hofman, R. S. Hollis, R. Holynski, B. Holzman, A. Iordanova, J. L. Kane, P. Kulinich, C.M. Kuo, W. Li, W. T. Lin, C. Loizides, S. Manly, A. C. Mignerey, R. Nouicer, A. Olszewski, R. Pak, C. Reed, E. Richardson, C. Roland, G. Roland, J. Sagerer, P. Sarin, I. Sedykh, C. E. Smith, M.A. Staniewicz, P. Steinberg, G. S. F. Stephans, A. Sukhanov, M. B. Tonjes, A. Trzupek, G. J. van Nieuwenhuizen, S.S. Vaurynovich, R. Verdier, G. I. Veres, P. Walters, E. Wenger, D. Willhelm, F. L. H. Wolfs, B. Wosiek, K. Wozniak, S. Wyngaardt, and B. Wyslouch, “System Size and Centrality Dependence of Charged Hadron Transverse Momentum Spectra in Au + Au and Cu + Cu Collisions at sqrt(sNN) = 62.4 and 200 GeV,” Phys. Rev. Lett., 2006, 96, 212301/1-4.

J. C. Rodgers, C. Kaur, Y.-G. Chen and J. D. Weeks, “Attraction Between Like-Charged Walls: Short-Ranged Simulations Using Local Molecular Field Theory,” Phys. Rev. Lett., 2006, 97, 097801/1-4

B. B. Back, M. D. Baker, M. Ballintijn, D. S. Barton, R. R. Betts, A. A. Bickley, R. Bindel, A. Budzanowski, W. Busza, A. Carroll, Z. Chai, M. P. Decowski, E. Garcia, T. Gburek, N. George, K. Gulbrandsen, S. Gushue, C. Halliwell, J. Hamblen, M. Hauer, G.A. Heintzelman, C. Henderson, D. J. Hofman, R. S. Hollis, R. Holynski, B. Holzman, A. Iordanova, E. Johnson, J. L. Kane, J. Katzy, N. Khan, W. Kucewicz, P. Kulinich, C.M. Kuo, W. T. Lin, S. Manly, A. C. Mignerey, R. Nouicer, A. Olszewski, R. Pak, I.C. Park, H. Pernegger, C. Reed, C. Roland, G. Roland, J. Sagerer, P. Sarin, I. Sedykh, W. Skulski, C. E. Smith, P. Steinberg, G. S. F. Stephans, A. Sukhanov, M. B. Tonjes, A. Trzupek, C. Vale, G. J. van Nieuwenhuizen, R. Verdier, G. I. Veres, F. L. H. Wolfs, B. Wosiek, K. Wozniak and B. Wyslouch, “Energy Dependence of Directed Flow over a Wide Range of Pseudorapidity in Au + Au Collisions at RHIC,” Phys. Rev. Lett., 2006, 97, 012301/1-4.

Proceedings of the National Academy of Sciences

M. S. Li, C. K. Hu, D. K. Klimov and D. Thirumalai, “Multiple Stepwise Refolding of Immunoglobulin Domain I27 Upon Force Quench Depends on Initial Conditions,” Proc. Nat’l Acad. Sci., 2006, 103, 93-98

Y.-G. Chen and J. D. Weeks, “Local Molecular Field Theory for Effective Attractions Between Like-charged Objects in Systems with Strong Coulomb Interactions,” Proc. Natl. Acad. Sci., 2006, 103, 7560-7565.

C. N. LaFratta, L. Li and J. T. Fourkas, “Soft-Lithographic Replication of 3D Microstructures with Closed Loops,” Proc. Nat. Acad. Sci., 2006, 103, 8589–8594.

 
 
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