College of Computer, Mathematical and Natural Sciences

Representative Faculty Publications

Publication Year: 
2010

ACS Nano

Liu, R.; Duay, J. and Lee,S.B. “Redox Exchange Induced MnO2-Nanoparticle Enrichment in Poly(3,4-ethylenedioxythiophene) Nanowires for Electrochemical Energy Storage.” ACS Nano 2010, 4, 4299–4307.

Cleveland, E.R.; Banerjee,P.; Perez, I.; Lee, S.B. and Rubloff, G.W. “Profile Evolution for Conformal Atomic Layer Deposition over Nanotopography.” ACS Nano 2010, 4, 4637–4644.

Analytical Chemistry

Zhang, J.; Wang Y. and Li, S. “Deuterium Isobaric Amine-reactive Tags For Quantitative Proteomics.”Anal. Chem. 2010, 82, 7588-7585.

Angewandte Chemie International Edition

Wei,J.; Zhang, W. and Sita, L. R.“Aufbaureaktion Redux: Scalable Production of Precision Hydrocarbons from AlR3(R = Et or iBu) by Dialkyl Zinc Mediated Ternary Living Coordinative Chain-Transfer Polymerization.” Angew.Chem. Int. Ed. 2010, 49, 1768-1772.

Liu, Z.;Jackson, G. and Eichhorn, B. “PtSn Intermetallic, Core-Shell and Alloy Nanoparticles as CO-Tolerant Electrocatalysts for HOxidation.” Angew.Chem. Int. Ed. 2010, 49, 3173-3176.

Wang, J.; Stefane, B.; Jaber, D.; Smith,J.; Vickery, C.; Diop, M. and Sintim, H.“Remote C-H functionalization; using an atom-economical tether (N-O) to obtain1,5- and the rare 1,7-C-H insertions.” Angew.Chem. Int. Ed. 2010, 49, 3964-3968.

Wang, H and Rokita, S. “Dynamic Cross-linking is Retained in Duplex DNA After Multiple Exchange of Strands” Angew.Chem. 2010, 49, 5957-5960.

Wei,J.; Wickham, R. and Sita, L.R.“Programmable Modulation of Co-monomer Relative Reactivities for Living Coordination Polymerization through Reversible Chain Transfer between “Tight”and “Loose” Ion Pairs.” Angew. Chem. Int.Ed. 2010, 48, 9140-9144.

Chemical Communications

Yahav-Levi, A.;Goldberg, I.; Vigalok, A. and Vedernikov,A.N. “Aryl-Bromide Reductive Elimination from an Isolated Pt(IV) Complex.” Chem. Comm. 2010, 46, 3324-3326.

Harrell,Jr., W.A; Bergmeyer, M.L.; Zavalij, P.Y. and Davis, J. “Ceramide-Mediated Transport of Chloride and Bicarbonate Across Phospholipid Membranes.” Chem. Comm. 2010, 46, 3950-3952.

Cao, L.-P.; Meng, X.-G.; Ding, J.-Y.; Chen,Y.-F.; Gao, M.; Wu, Y.-D.; Li, Y.-T.; Wu, A. X. and Isaacs, L. “Nanotubular Non-covalent Macrocycle within Non-covalent Macrocycle Assembly: (MeOH)12 Cyclododecamer Encapsulated in a Molecular Clip Cyclododecamer.” Chem.Comm. 2010, 46, 4508-4810.

Busschaert, N; Gale, P.A.; Haynes, C.; Light, M.E.; Moore, S.J.; Tong, C.C.;Davis, J.T. and Harrell,W.A. “Tripodal TransmembraneTransporters for Bicarbonate.” Chem.Comm. 2010, 46, 6252-6254.

Jiang, J.; Zhang, J. and Li, S. “Detecting protein interactions in live cells via complementation of a hydrolysis-deficient β-lactamase.” Chem. Comm. 2011, 47, 182-184. Epub 2010 Aug 10.

Chemical Review

Doyle,M.P.; Duffy, R.; Ratnikov,M. and Zhou, L. “Catalytic Carbene Insertion into C-H Bonds.” Chem. Rev.,2110, 110, 704-724.

Chemical Society Reviews

Davis, J.T.; Okunola, O. and Quesada, R. “Recent Advances in the Transmembrane Transport of Anions.” Chem. Soc. Rev. 2010, 39, 3843-3862.

Current Opinion in Structural Biology

Zhuravlev,P. I. and Papoian, G.A. “Functional vs. Folding Landscapes: The Same yet Different.” Curr. Opin. Struct. Biol. 2010, 20, 16–20

Bryan,P. N.; Orban, J. “Proteins that switch folds.” Curr. Opin. Struct. Biol. 2010, 20,482-488.

Journal of Biological Chemistry

Shadrick, W.R. and Julin, D.A.“Kinetics of DNA Unwinding by the Rec D2 Helicase from Deinococcusradiodurans.” J. Biol. Chem. 2010, 285, 17292-17300.

Chen, C.; Sun, Q.; Narayanan, B.,Nuss, D.L. and Herzberg, O. “Structure of oxalacetate acetylhydrolase, a virulence factor of the chestnut blight fungus.” J. Biol. Chem.2010,285, 26685-96.

Journal of Proteome Research

Cannon, J.;Lohnes, K.; Wynne, C.; Wang, Y.; Edwards, N. and Fenselau, C. “High-throughput Middle-Down Analysis Using an Orbitrap.” J. Prot. Res. 2010, 9, 3886-3890. PMID 20557100 PMIC 2917504.

Journal of the American Chemical Society

Brozena, A.H.; Moskowitz,J.; Shao, B.; Deng, S. L.; Liao, H. W.; Gaskell K.J. and Wang, Y.H. “Outer wall selectively oxidized,water-soluble double-walled carbon nanotubes.” J. Am. Chem. Soc. 2010, 132,3932-3938.

Ghosh,S. and Isaacs, L. “Biological Catalysis Regulated by Cucurbit[7]uril Molecular Containers.” J. Am. Chem. Soc. 2010, 132, 4445-4454.

Nilekar, A.; Alayoglu, S.; Eichhorn, B. and Mavrikakis, M. “Preferential CO oxidation in hydrogen: Reactivity of core-shell nanoparticles.” J. Am. Chem. Soc. 2010, 132,7418–7428.

Sheppard, D.;Godoy-Ruiz, R.; Li, D.W.; Brüschweiler, R. and Tugarinov V. “Variation in quadrupole couplings of a-deuterons inubiquitin suggests the presence of Ca-Ha...O=C hydrogenbonds.” J. Am. Chem. Soc. 2010, 132, 7709-7719.

Berlin, K.; O’Leary, D.P. and Fushman, D. “Structural Assembly of Molecular Complexes Based on Residual Dipolar Couplings.” J. Am. Chem. Soc. 2010, 132, 8961-8972.

Roy, V.; Smith,J.A.I.; Stewart, J.E.; Wang, J.; Bentley, W.E. and Sintim, H.O. “Synthetic analogs tailor native AI-2 signaling across bacterial species.” J. Am. Chem. Soc. 2010, 132, 11141-11150.

Fontaine, P.P.; Yonke,B.L.; Zavalij, P.Y. and Sita,L.R. “Dinitrogen Complexation and Extent of N≡N Activation within the Group 6 "End-On-Bridged" Dinuclear Complexes, {(η5-C5Me5)M[N(i-Pr)C(Me)N(i-Pr)]}2(μ-η11-N2)(M = Mo and W),” J. Am. Chem. Soc. 2010, 132, 12273-12285.

Guo, C.;Godoy-Ruiz, R. and Tugarinov, V. “High-resolution measurement of 13Cm-13Cand 13Cm-1Hm residual dipolar couplings in methyl groups of large proteins.” J. Am. Chem. Soc. 2010, 132, 13984-13987.

Oloo, W.N.;Zavalij, P.Y.; Zhang, J.; Khaskin, E. and Vedernikov,A.N. “Preparation and C-X Reductive Elimination Reactivity of Monoaryl PdIV-X Complexes in Water (X = OH, OH2, Cl, Br).” J.Am. Chem. Soc. 2010, 132, 14400-14402.

Godoy-Ruiz,R., Guo, C. and Tugarinov, V.“Alanine methyl groups as NMR probes of molecular structure and dynamics in large proteins.” J. Am. Chem. Soc. 2010, 132,18340-18350.

Lab Chip

Kumi,G.; Yanez, C.R.; Belfield, K.D. and Fourkas, J.T. “High-Speed Multiphoton Absorption Polymerization: Fabrication of Microfluidic Channels with Arbitrary Cross-Sections and High Aspect Ratios.” Lab Chip 2010, 10,1057-1060.

Nano Letters

Ropp, C.; Cummins, Z.;Probst, R.; Qin, S. and Fourkas, J.T.; Shapiro, B.; and Waks, E.“Positioning and Immobilization of Individual Quantum Dots with Nanoscale Precision.” Nano Lett. 2010, 10, 4673 - 4679.

Nanomedicine

He, B.; Kim, S.K.; Son, S.J. and Lee, S.B. “Shape-coded silica nanotubes for multiplexed bioassay: rapid and reliable magnetic decoding protocols.” Nanomedicine 2010, 5, 77-88.

Nature Chemistry

Kim,C.; Agasti, S.S.; Zhu, Z.; Isaacs,L. and Rotello, V. M. “Host-Guest Chemistry Inside the Cell: Recognition-Mediated Activation of Therapeutic Gold Nanoparticles.” Nature Chemistry 2010, 2,962-966.

Davis, J.T. “Anion Transport Easy as Pi.” Nature Chemistry 2010, 2, 516-517.

Nature Materials

Zhang, C.; Grass, M.;McDaniel, A.H.; DeCaluwe, S.C.; El Gabaly, F.; Liu, Z.; McCarty, K.F.; Farrow,R.L.; Linne, M.A.; Hussain, Z.; Jackson, G.S.; Bluhm, H. and Eichhorn, B.W.“Measuring fundamental properties in operating solid oxide electrochemical cells by using in situ X-ray photoelectron spectroscopy.“ Nature Materials 2010, 9, 944–949.

Nucleic Acids Research

Bond, L.M.; Peters,J.P.; Becker, N.A.; Kahn J.D. andMaher, L.J. “Gene repression by minimal lac loops in vivo.Nucleic Acids Res. 2010,38, 8072-8082.

Thomas, S.; Keller, C.; Szyk, A.; Cannon. J. and LaRonde-LeBlanc, N. “Structural insight into the functional mechanism of Nep1/Emg1 N1-specific pseudouridine methyltransferase in ribosome biogenesis.” Nuc. Acids. Res. 2010. Published online 11/17/2010. PMID:21087996

Organic Letters

Zhou, L and Doyle, M.P. “Stereoselective Synthesis of Highly Functionalized a-Diazo-b-ketoalkanoates via Catalytic One-Pot Mukayama-Aldol Reactions.” Org.Lett. 2010, 12, 796-799.

Yu Liu, Y.; Bakshi, K.; Zavalij, P. and Doyle, M. P. “Pericyclic Reaction of a Zwiterionic Salt of an Enedione-diazoester. A Novel Strategy for the Synthesis of Highly Functionalized Resorcinols.” Org. Lett.2010, 12, 4303-4307.

Physical Review Letters

B. Alver; Mignerey, A.; et al. [PHOBOS Collaboration] “High transverse momentum triggered correlations over a large pseudo rapidity acceptance in Au+Au collisions at √ sNN = 200 GeV.” Phys. Rev. Lett. 2010, 104, 062301.

Alver, B.; Mignerey, A.; et al. [PHOBOS Collaboration] “Event-by-event fluctuations of azimuthal particle anisotropy in Au+Au collisions at √ sNN =200GeV.” Phys. Rev. Lett. 2010, 104, 142301.

Adare, A.; Mignerey, A.; et al., [PHENIX Collaboration],“Transition in Yield and Azimuthal Shape Modification in Dihadron Correlations in Relativisitc Heavy Ion Collisions.” Phys. Rev. Lett.2010, 104, 252301.

Khachatryan, V.; Mignerey,A.; et al.,[CMS Collaboration], “Transverse-Momentum and Pseudo rapidity Distributions of Charged Hadrons in pp collisions at √ s = 7 TeV.” Phys.Rev. Lett. 2010, 105, 022002.

Adare, A.; Mignerey, A.;et al., [PHENIX Collaboration],“Elliptic and Hexadecapole Flow of Charged Hadrons in Au + Au Collisions at √ sNN =200 GeV.” Phys. Rev. Lett. 2010, 105, 062301.

Hu,Z. and Weeks, J.D. “Efficient solutions of self-consistent mean field equations for dewetting and electrostatics in nonuniform liquids.” Phys.Rev. Lett. 2010, 105, 140602:1-4

Adare, A; Mignerey, A.;et al., [PHENIX Collaboration], “Azimuthal Anisotropy of πo Production in Au + Au Collisions at √sNN =200 GeV: Path Length Dependence of Jet Quenching and the Role of Initial Geometry.” Phys. Rev. Lett. 2010, 105, 142301.

Proceedings of the National Academy of Science

Savelyev,A. and Papoian, G.A. “Chemically accurate coarse graining of double-stranded DNA.” Proc. Natl. Acad. Sci. USA 2010,107, 20340–5

Progress in Nuclear Magnetic Resonance Spectroscopy

Sheppard, D.; Sprangers, R. and Tugarinov, V. “Experimental approaches for NMR studies of side-chain dynamics in high-molecular-weight proteins” Review. Prog. Nucl. Magn. Reson. Spectrosc.2010, 56, 1-45.

Protein Science

Li, J.;Shefcheck, K.; Callahan, J. and Fenselau,C. “Primary sequence and site-selective hydroxylation of prolines in iso forms of a major peanut allergen protein Ara h 2.” Protein Science 2010, 19: 174-182. PMID 19937656 PMIC 2817853.

Proteomics

Wynne, C.,Edwards, N. and Fenselau, C.“Phyloproteomic classification of unsequenced organisms by top-down identification of bacterial proteins using capLC-MS/MS on an Orbitrap.” Proteomics 2010, 10: 3631-3643(2010).PMID: 20845332.

Quarterly Reviews of Biophysics

Zhuravlev,P.I. and Papoian, G.A. “Protein functional landscapes, dynamics, allostery: a tortuous path towards a universal theoretical framework.” Q Rev. Biophys.2010, 43(3), 295–332.