Representative Faculty Publications (2012)
ACS Accounts of Chemical Research
Vedernikov, A. N. “Direct Functionalization of M‑C (M = PtII, PdII) Bonds Using Environmentally Benign Oxidants, O2 and H2O2.” Acc. Chem. Res., 2012, 45, 803-813.
ACS Catalyst
Zhang, C.; Grass, M. E.; Yu, Y.; Gaskell, K. J.; DeCaluwe, S. C.; Jackson, G. S.; Hussain, Z.; Bluhm, H.; Eichhorn, B. W.; Liu, Z. “Multi-element Activity Mapping and Potential Mapping in Solid Oxide Electrochemical Cells through the use of operando XPS.” ACS Catalysis, 2012, 2, 2297-2304.
ACS Chemical Biology
Gamby, S; R., Varnika; Guo, M.; Smith, J. A. I.; Wang, J.; Wang, X.; Stewart, J. E.; Bentley, W. E.; Sintim, H. O. “Altering the Communication Networks of Multispecies Microbial Systems Using a Diverse Toolbox of AI-2 Analogs.” ACS Chem. Biol. 2012, 7, 1023-1030.
ACS Nano
Hong, J. W.; Kang, S. W.; Choi, B. S.; Kim, D.; Lee, S. B.; Han, S. W. “Controlled Synthesis of Pd-Pt Alloy Hollow Nanostructures with Enhanced Catalytic Activities for Oxygen Reduction.” ACS Nano, 2012, 6, 2410-2419.
Haspert, L. C.; Lee, S. B.; Rubloff, G. W. “Nanoengineering Strategies for Metal-Insulator-Metal Electrostatic Nanocapacitors.” ACS Nano, 2012, 6, 3528-3536.
Analytical Chemistry
Fenselau, C. “Supporting Measurement Science with Annual Reviews.” Anal. Chem., 2012, 84, 485-486.
Das, S.; Powe, A.; Baker, G.; Valle, B.; El-Zahab, B.; Sintim, H. O.; Lowry, M.; Fakayode, S.; McCarroll, M.; Patonay, G.; Li, M.; Strongin, R.; Geng, M.; Warner, I.. “Molecular Fluorescence, Phosphorescence, and Chemiluminescence Spectrometry.” Anal. Chem. 2012, 84, 597-625
Cannon, J.; Nakasone, M.; Fushman, D.; Fenselau, C. “Proteomic Identification and Analysis of K63-linked Ubiquitin Conjugates.” Anal. Chem, 2012, 84, 10121-10128.
Wang, C.; Lee, C. S.; Smith, R. D.; Tang, K. “Ultrasensitive Sample Quantitation via Selected Reaction Monitoring.” Anal. Chem., 2012, 84, 10395-10403.
Angewandte Chemie International Edition
Kim, D.; Lee, Y. W.; Lee, S. B.; Woo, S. W. “Convex Polyhedral Au@Pd Core-Shell Nanocrystals with High-Index Facets.” Angew. Chem. Int. Ed., 2012, 51, 159-163.
He, J.; Yu, B. Y.; Hourwitz, M. J.; Liu, Y. J.; Perez, M. T.; Yang, J.; Nie, Z. H. “Wet-Chemical Synthesis of Amphiphilic Rodlike Silica Particles and Their Molecular-Mimetic Assembly in Selective Solvents.” Angew. Chem. Int. Ed. 2012, 51, 3628-3633.
Qian, Y.; Xu, X.; Wang, X.; Zavalij, P. J.; Hu, W.; Doyle, M. P. “Rhodium(II) and Copper(II) Catalyzed Reactions of Enoldiazoacetates with Nitrones. Metal Carbene versus Lewis Acid Directed Pathways.” Angew. Chem. Int. Ed., 2012, 51, 5900-5903.
Wang, X.; Abrahams, Q. M.; Zavalij, P. Y.; Doyle, M. P. “Highly Regio- and Stereoselective Dirhodium Vinylcarbene-induced Nitrone Cycloaddition with Subsequent Cascade Carbenoid Aromatic Cycloaddition/N-O Cleavage and Rearrangement.” Angew. Chem. Int. Ed., 2012, 51, 5907-5910.
You, I.; Kang, S. M.; Lee, S.; Cho, Y. O.; Kim, J. B.; Lee, S. B.; Nam, Y. S.; Lee, H. “Polydopamine Microfluidic System Toward a Two-Dimensional, Gravity-Driven Mixing Device.” Angew. Chem. Int. Ed., 2012, 51, 6126-6130.
Xu, X.; Zavalij, P. Y.; Doyle, M. P. “Synthesis of Tetrahydropyridazines by a Metal-Carbene Directed Highly Enantioselective Vinylogous N-H Insertion/Lewis Acid Catalyzed Diastereoselective Mannich Addition.” Angew. Chem. Int. Ed., 2012, 51, 9829-9833.
Ma, D.; Zhang, B.; Hoffmann, U.; Grosse Sundrup, M.; Eikermann, M.; Isaacs, L. “Acyclic Cucurbit[n]uril Type Molecular Containers Bind Neuromuscular Blocking Agents in Vitro and Reverse Neuromuscular Block In Vivo.” Angew. Chem. Int. Ed., 2012, 51, 11358-11362.
Atmospheric Chemistry and Physics
Choi, S.; Wang, Y.; Salawitch, R. J.; Canty, T.; Joiner, J.; Zeng, T.; Kurosu, T. P.; Chance, K.; Richter, A.; Huey, L. G.; Liao, J.; Neuman, J. A.; Nowak, J. B.; Dibb, J. E.; Weinheimer, A. J.; Diskin, G.; Ryerson, T. B.; da Silva, A.; Curry, J.; Kinnison, D.; Tilmes, S.; Levelt, P. F. “Analysis of Satellite-Derived Arctic Tropospheric BrO Columns in Conjunction with Aircraft Measurements During ARCTAS and ARCPAC.” Atmos. Chem. Phys., 2012, 12, 1255-1285.
Liao, J., Huey, L. G., Scheuer, E., Dibb, J. E., Stickel, R. E., Tanner, D. J., Neuman, J. A., Nowak, J. B., Choi, S., Wang, Y., Salawitch, R. J., Canty, T., Chance, K., Kurosu, T., Suleiman, R., Weinheimer, A. J., Shetter, R. E., Fried, A., Brune, W., Anderson, B., Zhang, X., Chen, G., Crawford, J., Hecobian, A., and Ingall, E. D.
“Characterization of Soluble Bromide Measurements and a Case Study of BrO Observations During ARCTAS.” Atmos. Chem. Phys., 2012, 12, 1327-1338.
Tilmes, S.; Kinnison, D. E.; Garcia, R. R.; Salawitch, R.; Canty, T.; Lee-Taylor, J.; Madronich, S.; Chance, K. “Impact of Very Short-Lived Halogens on Stratospheric Ozone Abundance and UV Radiation in a Geo-engineered Atmosphere.” Atmos. Chem. Phys., 2012, 12, 10945-10955.
Chemical Communications
Nguyen, T. M.; Cho, S.; Varongchayakul, N; Yoon, D; Seog, J; Zong, K; Lee, S. B. “Electrochemical Synthesis and One Step Modification of PMProDot Nanotubes and Their Enhanced Electrochemical Properties.” Chem. Commun., 2012, 48, 2725-2727.
Bahmanjah, S.; Zhang, N.; Davis, J. T. “Monoacylglycerols as Transmembrane Cl-Aanion Transporters.” Chem. Commun., 2012, 48, 4432-4434.
Isaacs, L.; Chernikova, E.; Berdnikova, D.; Fedorov, Y.; Fedorova, O.; Peregudov, A. “Self-Assembly of a Ternary Architecture Driven by Cooperative Hg2+ ion Binding Between Cucurbit[7]uril and Crown Ether Macrocyclic Hosts.” Chem. Commun., 2012, 48, 5256-7258.
He, J.; Zhang, P.; Gong, J. L.; Nie, Z. H. “Facile Synthesis of Functional Au Nanopatchies and Nanocups.” Chem. Commun., 2012, 48, 7344-7346. (Selected as Front Cover Page and Hot Article).
Shen, Z.; Nakayama, S.; Semancik, S.; Sintim, H. O. “Signal-on Electrochemical Y or Junction Probe Detection of Nucleic Acid.” Chem. Commun. 2012, 48, 7580-7582.
Nakayama, S., Luo, Y., Zhou, J., Dayie, T. K., Sintim, H. O. “Nanomolar Fluorescent Detection of c-di-GMP Using a Modular Aptamer Strategy.” Chem. Commun., 2012, 48, 9059-9061.
Xu, X.; Zavalij, P. Y.; Hu, W.; Doyle, M. P. “Efficient Synthesis of Oxazoles by Dirhodium(II)-Catalyzed Reactions of Styryl Diazoacetate with Oximes.” Chem. Commun., 2012, 48, 11522-11524.
Chemical Science
Appel, E. A.; Dyson, J.; del Barrio, J.; Isaacs, L.; Scherman, O. A. “Nor-Seco-Cucurbit[10]uril Mediated Folding of Single Polymer Cains in Water.” Chem. Sci. 2012, 3, 2278-2281.
Dawood , F.; Qin, S.; Li, L.; Lin, E. Y.; Fourkas, J. T. “Simultaneous Microscale Optical Manipulation, Fabrication and Immobilisation in Aqueous Media.” Chem. Sci., 2012, 3, 2449-2456.
Chemistry-A European Journal
Park, K. H.; Lee, Y. W.; Kim, D.; Lee, K.; Lee, S. B.; Han, S. W. “Synthesis and Photocatalytic Properties of Cu2S-Pd4S Hybrid Nanoplates.” Chemistry-A European Journal, 2012, 18, 5874-5878.
Journal of Biological Chemistry
Chen, C.; Gorlatova, N.; Herzberg, O. “Pliable DNA Conformation of Response Elements Bound to Transcription Factor p63.” J. Biol. Chem., 2012, 287, 7477-7486.
Rosenzweig, R.; Bronner, V.; Zhang, D.; Fushman, D. Glickman, M. H. “Rpn1 and Rpn2 Coordinate Ubiquitin Processing Factors at the Proteasome.” J. Biol. Chem., 2012, 287, 14659-14671.
Lange, A.; Castañeda, C. A.; Hoeller, D.; Lancelin, J.-M.; Fushman, D.; Walker, O. “Evidence for Cooperative and Domain-Specific Binding of the Signal Transducing Adaptor Molecule 2 (STAM2) to Lys63-Linked Diubiquitin.” J. Biol. Chem., 2012, 287, 18687-18699.
Journal of Proteome Research
Choksawangkarn, W.; Edwards, N.; Wang, Y.; Gutierrez, P.; Fenselau, C. “Comparative Study of Workflows Optmized for In-gel, In-solution and On-filter Proteolysis in the Analysis of Plasma membrane Proteins.” J. Prot. Res., 2012, 11, 3030-3034.
Fang X.; Wang C.; Balgley B. M.; Zhao K.; Wang W.; He F.; Weil R. J.; Lee C. S. “Targeted Tissue Proteomic Analysis of Human Astrocytomas.” J. Prot. Res., 2012, 11, 3937-3946.
Journal of the American Chemical Society
He, J.; Perez, M. T.; Liu, Y. J.; Zhang, P.; Gong, J. L.; Nie, Z. H. “A General Approach to Synthesize Asymmetric Hybrid Nanoparticles by Interfacial Reactions.” J. Am. Chem. Soc., 2012, 134, 3639-3642.
Shen, C.; Ma, D.; Meany, B.; Isaacs, L.; Wang, Y. “Acyclic Cucurbit[n]uril Molecular Containers Selectively Solubilize Single Walled Carbon Nanotubes in Water.” J. Am. Chem. Soc., 2012, 134, 7254-7257.
Kocak, F.; Downing, D.; Zavalij, P.; Lam, Y.-F.; Vedernikov, A.; Eichhorn, B. “The Surprising Acid-Base and Ion-Sequestration Chemistry of Sn94‑: HSn93‑, Ni@HSn93‑ and the Sn93‑ Ion Revisited.” J. Am. Chem. Soc., 2012, 134, 9733-9740.
He, J; Liu, Y. J.; Babu, T.; Wei, Z. J.; Nie, Z. H. “Self-Assembly of Inorganic Nanoparticle Vesicles and Tubules Driven by Tethered Linear Block Copolymers.” J. Am. Chem. Soc., 2012, 134, 11342-11345.
Fenselau, C.; Isaacs, L.; Vinciguerra, B.; Cao, L.; Cannon, J.; Zavalij, P. “Synthesis and Self-Assembly Processes of Monofunctionalized Cucurbit[7]uril.” J. Am. Chem. Soc., 2012, 134, 13133-13140.
Dubinsky-Davidchik, I. S.; Potash, S.; Goldberg, I.; Vigalok, A.; Vedernikov, A. N. “Electrophilic Fluorination of Organoplatinum(II) Iodides: Iodine and Platinum Atoms As Competing Fluorination Sites.” J. Am. Chem. Soc. 2012, 134, 14027-14032.
Minami, T.; Esipenko, N. A.; Zhang, B.; Kozelkova, M. E.; Isaacs, L.; Kubo, Y.; Anzenbacher, P. Jr. “First Supramolecular Sensor for Nitrosamines.” J. Am. Chem. Soc. 2012, 134, 20021-20024.
Lab on a Chip
Wang, J. Y.; Hu, Y. D.; Deng, R.H.; Xu, W. J.; Liu, S. Q.; Liang, R. J.; Nie, Z. H.; Zhu, J. T.; “Construction of Multifunctional Photonic Crystal Microcapsules with Tunable Shell Structures by Combining Microfluidic and Controlled Photopolymerization.” Lab on a Chip, 2012, 12, 2795–2798.
Wei, Z. J.; Amponsah, P. K.; Al-Shattic, M.; Bandyopadhyay, B. C.; Nie, Z. H. “Engineering of Polarized Tubular Structures in a Microfluidic Device to Study Calcium Phosphate Stone Formation.” Lab on a Chip, 2012, 12, 4037-4040.
Molecular & Cellular Proteomics
Singh, R. K.; Zerath, S.; Kleifeld, O.; Scheffner, M.; Glickman, M. H.; Fushman, D. “Recognition and Cleavage of Rub1 and Rub1-Ubiquitin Chains by Components of the Ubiquitin-Proteasome System.” Mol. Cell Proteomics, 2012, 11, 1595-1611.
Molecular Cell Research
Lai, M.-Y.; Zhang, D.; LaRonde-LeBlanc, N.; Fushman, D. “Structural and Biochemical Studies of the Open State of Lys48-linked Diubiquitin.” BBA - Molecular Cell Research, 2012, 1823, 2046-2056.
Nucleic Acids Research
Chen B., Zuo X., Wang Y. X., Dayie T. K. “Multiple Conformations of SAM-II Riboswitch Detected with SAXS and NMR Spectroscopy.” Nucleic Acids Res., 2012 Apr., 40(7), 3117-3130.
Haeusler, A. R.; Goodson, K. A.; Lillian, T. D.; Wang, X.; Goyal, S.; Perkins, N. C.; Kahn, J. D. “FRET Studies of a Landscape of Lac Repressor-mediated DNA Loops.” Nucleic Acids Res., 2012, 40, 4432–4445.
Donaldson, Gr. P.; Roelofs, K. G.; Luo, Y.; Sintim, H. O.; Lee, V. T. “A Rapid Assay for Affinity and Kinetics of Molecular Interactions with Nucleic Acids.” Nucleic Acids Res. 2012, 40(7), e48.
Nano Letters
Burson, K. M.; Wei, Y.; Cullen, W. G.; Fuhrer, M. S.; Reutt-Robey, J. E. “Potential Steps at C60-TiOPc-Ag(111) Interfaces: Ultrahigh-Vacuum-Noncontact Scanning Probe Metrology.” Nano Lett., 2012, 2859-2864.
Nature Chemistry
Ma, D.; Hettiarachchi, G.; Nguyen, D.; Zhang, B.; Wittenberg, J. B.; Zavalij, P. Y.; Briken, V.; Isaacs, L. “Acyclic Cucurbit[n]uril Molecular Containers Enhance the Solubility and Bioactivity of Poorly Soluble Pharmaceuticals.” Nat. Chem. 2012, 4, 503-510.
Qiu, H.; Li, M.; Jiang, L.-Q.; Lu, F.-P.; Zan, L.; Zhai, C.-W.; Doyle, M. P.; Hu, W.-H. “Highly Enantioselective Trapping of Zwitterionic Intermediates by Imines.” Nature Chemistry, 2012, 4, 733-738.
Nature Structural & Molecular Biology
Ferreira-Cerca, S.; V. Sagar; Diop, M.; Schäfer, T.; Wesseling, A.; Lu, H.; Chai, E.; Hurt, E.; LaRonde-LeBlanc, N. “ATP- Dependent Role of the Atypical Kinase Rio2 on the Evolving Pre-40S Subunit.” Nature Structural &Molecular Biology, 2012, Dec., 19(12), 1316-1323.
Organic Letters
Jaber, D. M.; Burgin, R. N.; Helper, M.; Zavalij, P. Y.; Doyle, M. P. “Competitive [2,3]- and [1,2]-Oxonium Ylide Rearrangements. Concerted or Stepwise?” Org. Lett., 2012, 14, 1676-1679.
Isaacs, L.; Cao, L. “Daisy Chain Assembly Formed From a Cucurbit[6]uril Derivative.” Org. Lett., 2012, 14, 3072-3075.
Trong, P.; Shanahan, C. S.; Doyle, M. P. “Divergent Stereocontrol of Acid Catalyzed Intramolecular Aldol Reactions of 2,3,7-Triketoesters: Synthesis of Highly Functionalized Cyclopentanones.” Org. Lett., 2012, 14, 3608-3611.
Physical Review Letters
Chatrchyan, S.; (Mignerey, A.); et al. “CMS Collaboration, Azimuthal Anisotropy of Charged Particles at High Transverse Momenta in PbPb Collisions at √sNN = 2.76 TeV.” Phys. Rev. Lett., 2012, 109, 022301 (15 pages).
Ohtsubo, T.; Stone, N. J.; Stone, J. R.; Towner, I. S.; Bingham, C. R.; Gaulard, C.; Koster, U.; Muto, S.; Nikolov, J.; Nishimura, ; Simpson, G. S.; Soti, G.; Veskovic, M.; Walters, W. B.; Wauters, F. “Magnetic Dipole Moment of the Doubly-Closed-Shell Plus One Proton Nucleus 49Sc.” Phys. Rev. Lett., 2012, 109, 032504-1-4.
Adare, A.; (Mignerey, A.); et al., PHENIX Collaboration, Observation of Direct-Photon Collective Flow in Au + Au Collisions at √sNN = 200 GeV.” Phys. Rev. Lett., 2012, 109, 122302 (7 pages).
Adare, A.; (Mignerey, A.); et al. “PHENIX Collaboration, Evolution of πo Suppression in Au + Au Collisions from √sNN = 39 to 200 GeV.” Phys. Rev. Lett., 2012, 109, 152301 (7 pages).
Chatrchyan, S.;
(Mignerey, A.); et al. “CMS Collaboration, Measurement of the Pseudorapidity and Centrality Dependence of the Transverse Energy Density in PbPb Collisions at √sNN = 2.76 TeV.” Phys. Rev. Lett., 2012, 109, 152303 (16 pages).
Chatrchyan, S.; (Mignerey, A.); et al. “CMS Collaboration, Observation of Sequential Upsilon Suppression in PbPb Collisions.” Phys. Rev. Lett., 2012, 109, 222301 (15 pages).
Adare, A.; (Mignerey, A.); et al. “PHENIX Collaboration, Cold-Nuclear-Matter Effects on Heavy-Quark Production in d + Au Collisions at √sNN = 200 GeV.” Phys. Rev. Lett., 2012, 109, 242301 (7 pages).
PLOS Computational Biology
Driscoll, M. K.; McCann, C.; Kopace, R.; Homan, T.; Fourkas, J. T. “Carole Parent and Wolfgang Losert, Cell Shape Dynamics: From Waves to Migration.” PLOS Comput. Biol., 2012, 8(3), e1002392.
Proceedings of the National Academy of Science
Zhuravlev, P. I.; Lan, Y.; Minakova, M. S.; Papoian, G. A. “Theory of Active Transport in Filopodia and Stereocilia.” Proc. Natl. Acad. Sci. USA, 2012, 109, 10849-10854.
Mandal, D.; Jarzynski, C. “Work and Information Processing in a Solvable Model of Maxwell’s Demon.” Proc. Natl. Acad. Sci. USA, 2012, 109, 11641-11645.
Potoyan, D. A.; Papoian, G. A. “Regulation of the H4 Tail Binding and Folding Landscapes via Lys-16 Acetylation.” Proc. Natl. Acad. Sci. USA, 2012, 109, 17857-17862.
Zheng, W.; Schafer, N.; Davtyan, A.; Papoian, G. A.; Wolynes, P. G. “Predictive Energy Landscapes for Protein-Protein Association.” Proc. Natl. Acad. Sci. USA, 2012, 109, 19244-19429
Structure
LaRonde-LeBlanc, N. “Defense Systems up: Structure of Subtype I-C/Dvulg CRISPR/Cas.” Structure, 2012, 20(9), 1450-1452.
