College of Chemical and Life Science

Software Packages

Accelrys DS Visualizer
The DS Visualizer provides functionality for visualizing, analyzing and sharing biological and chemical data. DS Visualizer allows molecular data to be viewed from multiple perspectives by providing the options to view data through 3D structures, sequences, and data tables.

ACDLABS (3D Viewer, ChemBasic, ChemSketch, CHNMR Viewer)
Advanced Chemistry Development, Inc., (ACD/Labs) is a chemistry software company offering solutions that truly integrate chemical structures with analytical chemistry information.

ChemOffice
Is a powerful suite of software, consisting of ChemDraw, Chem3D, ChemFinder and ChemACX for chemists, BioOffice, BioAssay, BioViz, and BioDraw for biologists, and Inventory, E-Notebook and The Merck Index for scientists.

Clustal X
Clustal X (Thompson et al.1997) is a version of Clustal W with a graphical user interface. The current version is Clustal X2 (Larkin et al. 2007).The program is designed to (1) perform multiple alignments, (2) viewthe results of the alignment process, and (3) if necessary, improve the alignment.

PyMOL
PyMOL is a USER-SPONSORED molecular visualization system on an OPEN-SOURCE foundation

DiscoveryGate

These tools represent the latest technology from Symyx, the recognized leader in discovery informatics for the life sciences and chemistry in industry and academia.

End Note
Online bibliographic databases, organize their references, images and PDFs in any language.

GIMP
GIMP is the GNU Image Manipulation Program. It is a freely distributed piece of software for such tasks as photo retouching, image composition and image authoring.

Graph Pad Prism5

GraphPad Prism is a powerful combination of basic biostatistics, curve fitting and scientific graphing in one comprehensive program.

HyperChem Professional

Computational methods include molecular mechanics, molecular dynamics, and semi-empirical and ab-initio molecular orbital methods, as well as density functional theory. HyperChem Data and HyperNMR are included as part of HyperChem.

ISIS Draw 2.4

You can use it to draw chemical structures, and export them for viewing as 3D models.

MestRe-C
MestRe-C is a useful software package which offers state-of-the-art facilities for data processing, visualization and analysis

MestRe Nova
MestRe makes NMR data processing, simulation and analysis a pleasure. All the tools you need are at your fingertips in a single, intuitive environment, and the program handles all the complex, technical aspects of the process for you.

Molegro Molecular Viewer

Molworks ver 2.0Molegro Molecular Viewer is able to visualize most common molecular file formats (PDB, Mol2, SDF) as well as docking results from Molegro Virtual Docker.

National Instruments - LabView

LabVIEW graphical programming has revolutionized the development of test, measurement, and control applications. Regardless of experience, engineers and scientists can rapidly and cost-effectively interface with measurement and control hardware, analyze data, share results, and distribute systems.

SciFinder 2007

SciFinder is a research discovery tool that allows college students and faculty to access a wide diversity of research from many scientific disciplines, including biomedical sciences, chemistry, engineering, materials science, agricultural science, and more.

UCSF Chimera
UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles.